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test_and_publish.yml
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name: Test and deploy code
on: [push]
jobs:
# test:
# runs-on: ${{ matrix.os }}
# strategy:
# fail-fast: false
# matrix:
# os: ["ubuntu-latest", "macos-latest", "windows-latest"]
# python-version: ["3.8", "3.9", "3.10"]
# defaults: # Needed for conda
# run:
# shell: bash -l {0}
# steps:
# - uses: actions/checkout@v4
# with:
# lfs: true
# submodules: true
# - uses: conda-incubator/setup-miniconda@v3
# with:
# auto-update-conda: true
# python-version: ${{ matrix.python-version }}
# mamba-version: "*"
# miniforge-variant: Mambaforge
# channels: acellera,conda-forge,defaults
# - name: Install Linux HTMD conda deps
# if: matrix.os == 'ubuntu-latest'
# run: |
# mamba install --file package/htmd/DEPENDENCIES python=${{ matrix.python-version }} -y
# - name: Install MacOS HTMD conda deps
# if: matrix.os == 'macos-latest'
# run: |
# mamba install --file package/htmd/DEPENDENCIES_MAC python=${{ matrix.python-version }} -y
# - name: Install Windows HTMD conda deps
# if: matrix.os == 'windows-latest'
# run: |
# mamba install --file package/htmd/DEPENDENCIES_WIN python=${{ matrix.python-version }} -y
# - name: Install pip dependencies
# run: |
# pip install flake8 pytest
# pip install .
# - name: Lint with flake8
# run: |
# # stop the build if there are Python syntax errors or undefined names
# flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
# - name: Test
# run: |
# export HTMD_NONINTERACTIVE=1
# pytest --verbose --durations=10 ./htmd/
deploy:
# if: startsWith(github.event.ref, 'refs/tags/')
# needs: test
runs-on: ${{ matrix.os }}
defaults: # Needed for conda
run:
shell: bash -l {0}
strategy:
fail-fast: false
matrix:
os: ["windows-latest"]
python-version: ["3.8", "3.10"]
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: writedeps
auto-update-conda: true
python-version: ${{ matrix.python-version }}
mamba-version: "*"
miniforge-variant: Mambaforge
channels: acellera,conda-forge,defaults
- name: Dump Linux dependencies yaml file
if: matrix.os == 'ubuntu-latest'
run: |
pip install versioneer==0.28
python package/htmd/insert_placeholder_values.py package/htmd/DEPENDENCIES
- name: Dump MacOS dependencies yaml file
if: matrix.os == 'macos-latest'
run: |
pip install versioneer==0.28
python package/htmd/insert_placeholder_values.py package/htmd/DEPENDENCIES_MAC
- name: Dump Windows dependencies yaml file
if: matrix.os == 'windows-latest'
run: |
pip install versioneer==0.28
python package/htmd/insert_placeholder_values.py package/htmd/DEPENDENCIES_WIN
- name: Build htmd conda package
run: |
mamba install anaconda-client conda-build python=${{ matrix.python-version }} boa
conda mambabuild --python ${{ matrix.python-version }} package/htmd --output-folder ./pkg/ --no-include-recipe --no-anaconda-upload -c acellera -c conda-forge
- name: Upload to conda
run: |
anaconda -t ${{ secrets.ANACONDA_TOKEN_BASIC }} upload -u acellera ./pkg/*/htmd-*.tar.bz2