dpanonymize

dpanonymize is a PII removal tool for given data types. It's mainly designed to work with lochness on a PHOENIX structured data, but it also has functionalities to take separate file and folder with predefined datatype.

• Installation
• Debugging
• Tests
• Running
• Documentation

Installation

Just use pip:

pip install dpanonymize

For most recent DPACC-lochness:

pip install git+https://github.com/AMP-SCZ/dpanonymize

Debugging

cd ~
git clone https://github.com/AMP-SCZ/dpanonymize
cd dpanonymize
pip install .

If you do not have lochness installed already:

pip install git+https://github.com/AMP-SCZ/lochness

Tests

cd dpanonymize/tests
./dpanonymize_test.sh

Running

• Execute PII removal from lochness(sync.py)

  TBD

• Execute PII removal on a PHOENIX folder

# apply PII removal in all datatypes
dpanon.py --phoenix_root /path/to/PHOENIX

# or you can also select which datatype to apply PII removal
dpanon.py --phoenix_root /path/to/PHOENIX --datatype actigraphy
dpanon.py --phoenix_root /path/to/PHOENIX --datatype surveys

• Execute PII removal on a single file

dpanon.py \
    --in_file /path/to/surveys/file \
    --out_file /path/to/PII_removed/file \
    --datatype surveys

• Execute PII removal on a directory where there are multiple files of same data type

  This applies PII removal on all files under the given directory.

dpanon.py \
    --in_dir /path/to/surveys/directory \
    --out_dir /path/to/PII_removed/directory \
    --datatype surveys

Documentation

TBD