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Even with test data, I got this report |
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Hello, @lanternx :] FastPathology does not support reading .vsi images. FastPathology can only open the images supported by OpenSlide + ome.tiff. I recommend converting images in VSI format to a more open and better supported format like Generic TIFF, which works with commonly libraries like OpenSlide, FAST, cuCIM and other libraries. I made a WSI converter for just that, if you want to give that a go: Here is a simple tutorial demonstrating how to convert the VSI images to Generic TIFF: |
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Thank you🙂 |
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Hello, @lanternx :]
FastPathology does not support reading .vsi images. FastPathology can only open the images supported by OpenSlide + ome.tiff.
I recommend converting images in VSI format to a more open and better supported format like Generic TIFF, which works with commonly libraries like OpenSlide, FAST, cuCIM and other libraries.
I made a WSI converter for just that, if you want to give that a go:
https://github.com/andreped/vsi2tif
Here is a simple tutorial demonstrating how to convert the VSI images to Generic TIFF:
https://github.com/andreped/vsi2tif/blob/main/notebooks/conversion_tutorial.ipynb